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GrainGenes Marker Report: POPA3_1300

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Locus	POPA3_1300
Type	SNP
Synonym	Other name 12_31300 BOPA2_12_31300 Synonym 12_31300
Chromosome	2H
Chromosome Arm	2HL
Map	Hordeum-OPA-2009-2H 152.79 Hordeum-OPA123-2008-2H 152.79 Hordeum-OPAConsensus-2011-2H 166.6 Hordeum-OWB-OPA2008-2H 176.927
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_20591 i_12_31300
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 3_1300 Marker name in barley OPA1 = 12_31300 Original SNP name = U35_20591_995 Most representative HarvEST:Barley Assembly #32 Unigene = 10957 Most representative HarvEST:Barley Assembly #35 Unigene = 20591 HarvEST Unigene 35 Probe Set = Contig13862_at Unigene 35 Rice Locus = LOC_Os04g58600 Description for best rice BLAST hit to Unigene 35 member = L-asparaginase 4 precursor, putative, expressed; E value = 1E-172 Marker name in barley Pilot OPA3 = 3_1300 Marker name in barley OPA2 = 12_31300 Original SNP name = U35_6860_433 Description for best rice BLAST hit to Unigene 35 member = protein L-asparaginase 4 precursor, putative, expressed; E value = 1E-172 BLAST hit in the rice genome = L-asparaginase 4 precursor, putative, expressed
Probe for Locus	HAR35_20591
Locus	POPA3_1300
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare