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GrainGenes Marker Report: POPA3_1317

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Locus	POPA3_1317
Type	SNP
Synonym	Other name 12_31317 BOPA2_12_31317 Synonym 12_31317
Chromosome	5H
Chromosome Arm	5HS
Map	Hordeum-OPA-2009-5H 51 Hordeum-OPA123-2008-5H 51 Hordeum-OPAConsensus-2011-5H 42.41 Hordeum-OWB-OPA2008-5H 58.35
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_21473 i_12_31317
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 3_1317 Marker name in barley OPA1 = 12_31317 Original SNP name = U35_21473_455 Most representative HarvEST:Barley Assembly #32 Unigene = 16781 Most representative HarvEST:Barley Assembly #35 Unigene = 21473 HarvEST Unigene 35 Probe Set = Contig20274_at Unigene 35 Rice Locus = LOC_Os12g31380 Description for best rice BLAST hit to Unigene 35 member = translation initiation factor eIF-2B alpha subunit, putative, expressed; E value = 4E-85 Marker name in barley Pilot OPA3 = 3_1317 Marker name in barley OPA2 = 12_31317 Description for best rice BLAST hit to Unigene 35 member = protein translation initiation factor eIF-2B alpha subunit, putative, expressed; E value = 4E-85 BLAST hit in the rice genome = translation initiation factor eIF-2B alpha subunit, putative, expressed
Probe for Locus	HAR35_21473
Locus	POPA3_1317
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare