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GrainGenes Marker Report: POPA3_1326

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Locus
POPA3_1326
Type
SNP
Synonym
Other name12_31326
BOPA2_12_31326
Synonym12_31326
Map Data
Barley, OPA 2009, Consensus
Species
Hordeum vulgare
Probe
HAR35_22247
i_12_31326
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark
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Marker name in barley Pilot OPA1 = 3_1326
Marker name in barley OPA1 = 12_31326
Original SNP name = U35_22247_66
Most representative HarvEST:Barley Assembly #32 Unigene = 15198
Most representative HarvEST:Barley Assembly #35 Unigene = 22247
HarvEST Unigene 35 Probe Set = Contig17348_at
Unigene 35 Rice Locus = LOC_Os11g26580
Description for best rice BLAST hit to Unigene 35 member = hypothetical protein; E value = 0.000007
BLAST hit in the rice genome = hypothetical protein



Probe for Locus
HAR35_22247
Locus
POPA3_1326