GrainGenes Marker Report: POPA3_1338
Locus
POPA3_1338
Type
SNP
Chromosome
7H
Chromosome Arm
7HL
Map
Barley-Core-2014_7H 161.09 Hordeum-OPA-2009-7H 161.43 Hordeum-OPA123-2008-7H 161.43 Hordeum-OPAConsensus-2011-7H 157.44
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe
HAR35_2370
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 3_1338 Most representative HarvEST:Barley Assembly #32 Unigene = 4481 Most representative HarvEST:Barley Assembly #35 Unigene = 2370 HarvEST Unigene 35 Probe Set = Contig6220_at Unigene 35 Rice Locus = LOC_Os06g51400 Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 0.000000000000004 Marker name in barley Pilot OPA3 = 3_1338 Original SNP name = SCRI_bbc32814_01_394 Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 0.000000000000004 BLAST hit in the rice genome = expressed protein
Probe for Locus
HAR35_2370
Locus
POPA3_1338
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA3_1338
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