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GrainGenes Marker Report: POPA3_1341

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Locus	POPA3_1341
Type	SNP
Chromosome	3H
Chromosome Arm	3HL
Map	Barley-Core-2014_3H 160.76 Hordeum-OPA-2009-3H 170.86 Hordeum-OPA123-2008-3H 170.86 Hordeum-OPAConsensus-2011-3H 177.5 Hordeum-OWB-OPA2008-3H 203.644
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008 Barley, USDA Core, 2014 Consensus
Probe	HAR35_2412
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 3_1341 Most representative HarvEST:Barley Assembly #32 Unigene = 4750 Most representative HarvEST:Barley Assembly #35 Unigene = 2412 HarvEST Unigene 35 Probe Set = Contig6601_at Unigene 35 Rice Locus = LOC_Os01g73880 Description for best rice BLAST hit to Unigene 35 member = eukaryotic translation initiation factor 4E-1, putative, expressed; E value = 1E-105 Marker name in barley Pilot OPA3 = 3_1341 Original SNP name = U35_2412_91 Description for best rice BLAST hit to Unigene 35 member = protein eukaryotic translation initiation factor 4E-1, putative, expressed; E value = 1E-105 BLAST hit in the rice genome = eukaryotic translation initiation factor 4E-1, putative, expressed
Probe for Locus	HAR35_2412
Locus	POPA3_1341
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare