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GrainGenes Marker Report: POPA3_1359

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Locus	POPA3_1359
Type	SNP
Synonym	Other name 12_31359 BOPA2_12_31359 Synonym 12_31359
Chromosome	6H
Chromosome Arm	6HL
Map	Hordeum-OPA-2009-6H 60.9 Hordeum-OPA123-2008-6H 60.9
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_2831 i_12_31359
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 3_1359 Marker name in barley OPA1 = 12_31359 Original SNP name = U35_2831_840 Most representative HarvEST:Barley Assembly #32 Unigene = 5229 Most representative HarvEST:Barley Assembly #35 Unigene = 2831 HarvEST Unigene 35 Probe Set = Contig7122_s_at; Contig7123_at Unigene 35 Rice Locus = LOC_Os02g26794 Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 0.0000000003 Marker name in barley Pilot OPA3 = 3_1359 Marker name in barley OPA2 = 12_31359 HarvEST Unigene 35 Probe Set = Contig7122_s_at, Contig7123_at Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 0.0000000003 BLAST hit in the rice genome = expressed protein
Probe for Locus	HAR35_2831
Locus	POPA3_1359
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare