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GrainGenes Marker Report: POPA3_1381

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Locus
POPA3_1381
Type
SNP
Synonym
Other name12_31381
BOPA2_12_31381
Synonym12_31381
Chromosome
1H
Chromosome Arm
1HL
Map
Hordeum-OPA-2009-1H50.6
Hordeum-OPA123-2008-1H50.6
Hordeum-OPAConsensus-2011-1H44.59
Hordeum-OWB-OPA2008-1H57.714
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_3371
i_12_31381
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 13 ]
Marker name in barley Pilot OPA1 = 3_1381
Marker name in barley OPA1 = 12_31381
Original SNP name = U35_3371_1446
Most representative HarvEST:Barley Assembly #32 Unigene = 8030
Most representative HarvEST:Barley Assembly #35 Unigene = 3371
HarvEST Unigene 35 Probe Set = Contig10347_at; rbah44m17_s_at
Unigene 35 Rice Locus = LOC_Os10g35560
Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 0
Marker name in barley Pilot OPA3 = 3_1381
Marker name in barley OPA2 = 12_31381
HarvEST Unigene 35 Probe Set = Contig10347_at, rbah44m17_s_at
Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 0
BLAST hit in the rice genome = expressed protein



Probe for Locus
HAR35_3371
Locus
POPA3_1381
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare