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GrainGenes Marker Report: POPA3_1390

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Locus	POPA3_1390
Type	SNP
Synonym	Other name 12_31390 BOPA2_12_31390 Synonym 12_31390
Chromosome	5H
Chromosome Arm	5HS
Map	Barley, 2012 9KSNP 5H 44 Hordeum-OPA-2009-5H 50.27 Hordeum-OPA123-2008-5H 50.27 Hordeum-OPAConsensus-2011-5H 41.45
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_3506 i_12_31390
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 3_1390 Marker name in barley OPA1 = 12_31390 Original SNP name = U35_3506_1313 Most representative HarvEST:Barley Assembly #32 Unigene = 7074 Most representative HarvEST:Barley Assembly #35 Unigene = 3506 HarvEST Unigene 35 Probe Set = Contig9429_s_at; Contig9430_at Unigene 35 Rice Locus = LOC_Os12g38490 Description for best rice BLAST hit to Unigene 35 member = chitin-inducible gibberellin-responsive protein 1, putative, expressed; E value = 0 Marker name in barley Pilot OPA3 = 3_1390 Marker name in barley OPA2 = 12_31390 HarvEST Unigene 35 Probe Set = Contig9429_s_at, Contig9430_at Description for best rice BLAST hit to Unigene 35 member = protein chitin-inducible gibberellin-responsive protein 1, putative, expressed; E value = 0 BLAST hit in the rice genome = chitin-inducible gibberellin-responsive protein 1, putative, expressed
Probe for Locus	HAR35_3506
Locus	POPA3_1390
Synonym	Synonym CDO344
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare