GrainGenes Marker Report: POPA3_1413
Locus
POPA3_1413
Type
SNP
Chromosome
2H
Chromosome Arm
2HL
Map
Barley-Core-2014_2H 176.3 Hordeum-OPA-2009-2H 156.72 Hordeum-OPA123-2008-2H 156.72 Hordeum-OPAConsensus-2011-2H 169.66
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe
HAR35_4033
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 3_1413 Most representative HarvEST:Barley Assembly #32 Unigene = 6734 Most representative HarvEST:Barley Assembly #35 Unigene = 4033 HarvEST Unigene 35 Probe Set = Contig8729_at Unigene 35 Rice Locus = LOC_Os11g44300 Description for best rice BLAST hit to Unigene 35 member = hypothetical protein; E value = 0.00000000000008 Marker name in barley Pilot OPA3 = 3_1413 Description for best rice BLAST hit to Unigene 35 member = protein hypothetical protein; E value = 0.00000000000008 BLAST hit in the rice genome = hypothetical protein
Probe for Locus
HAR35_4033
Locus
POPA3_1413
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA3_1413
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