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GrainGenes Marker Report: POPA3_1417

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Locus
POPA3_1417
Type
SNP
Synonym
Other name12_31417
BOPA2_12_31417
Synonym12_31417
Chromosome
5H
Chromosome Arm
5HL
Map
Barley, 2012 9KSNP 5H93
Hordeum-OPA-2009-5H108.18
Hordeum-OPA123-2008-5H108.18
Hordeum-OPAConsensus-2011-5H96.12
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Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_4145
i_12_31417
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 3_1417
Marker name in barley OPA1 = 12_31417
Original SNP name = U35_4145_1152
Most representative HarvEST:Barley Assembly #32 Unigene = 7252
Most representative HarvEST:Barley Assembly #35 Unigene = 4145
HarvEST Unigene 35 Probe Set = Contig9679_at
Unigene 35 Rice Locus = LOC_Os09g34190
Marker name in barley Pilot OPA3 = 3_1417
Marker name in barley OPA2 = 12_31417
Description for best rice BLAST hit to Unigene 35 member = protein acyl-coenzyme A thioesterase 9, mitochondrial precursor., putative, expressed; E value = 0
BLAST hit in the rice genome = acyl-coenzyme A thioesterase 9, mitochondrial precursor., putative, expressed


Probe for Locus
HAR35_4145
Locus
POPA3_1417
Synonym
SynonymMWG903
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare