Query (optional)   in Class  

GrainGenes Marker Report: POPA3_1418

[Submit comment/correction]

Locus
POPA3_1418
Type
SNP
Synonym
Other name12_31418
BOPA2_12_31418
Synonym12_31418
Chromosome
7H
Chromosome Arm
7HL
Map
Barley, 2012 9KSNP 7H70.7
Hordeum-OPA-2009-7H79.6
Hordeum-OPA123-2008-7H79.6
Hordeum-OPAConsensus-2011-7H81.78
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_4155
i_12_31418
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 13 ]
Marker name in barley Pilot OPA1 = 3_1418
Marker name in barley OPA1 = 12_31418
Original SNP name = U35_4155_1282
Most representative HarvEST:Barley Assembly #32 Unigene = 9247
Most representative HarvEST:Barley Assembly #35 Unigene = 4155
HarvEST Unigene 35 Probe Set = Contig12123_at
Unigene 35 Rice Locus = LOC_Os08g37610
Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 1E-127
Marker name in barley Pilot OPA3 = 3_1418
Marker name in barley OPA2 = 12_31418
Original SNP name = U32_5857_1429
Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 1E-127
BLAST hit in the rice genome = expressed protein


Probe for Locus
HAR35_4155
Locus
POPA3_1418
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare