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GrainGenes Marker Report: POPA3_1432

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Locus	POPA3_1432
Type	SNP
Synonym	Other name 12_31432 BOPA2_12_31432 Synonym 12_31432
Chromosome	6H
Chromosome Arm	6HL
Map	Barley, 2012 9KSNP 6H 91.7 Hordeum-OPA-2009-6H 94.73 Hordeum-OPA123-2008-6H 94.73 Hordeum-OPAConsensus-2011-6H 107.49
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_4470 i_12_31432
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 3_1432 Marker name in barley OPA1 = 12_31432 Original SNP name = U35_4470_378 Most representative HarvEST:Barley Assembly #32 Unigene = 12662 Most representative HarvEST:Barley Assembly #35 Unigene = 4470 HarvEST Unigene 35 Probe Set = Contig16455_at; HU08C09u_at Unigene 35 Rice Locus = LOC_Os08g04170 Description for best rice BLAST hit to Unigene 35 member = zinc finger C-x8-C-x5-C-x3-H type family protein, expressed; E value = 2E-55 Marker name in barley Pilot OPA3 = 3_1432 Marker name in barley OPA2 = 12_31432 HarvEST Unigene 35 Probe Set = Contig16455_at, HU08C09u_at Description for best rice BLAST hit to Unigene 35 member = protein zinc finger C-x8-C-x5-C-x3-H type family protein, expressed; E value = 2E-55 BLAST hit in the rice genome = zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
Probe for Locus	HAR35_4470
Locus	POPA3_1432
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare