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GrainGenes Marker Report: POPA3_1448

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Locus
POPA3_1448
Type
SNP
Synonym
Other name12_31448
BOPA2_12_31448
Synonym12_31448
Chromosome
3H
Chromosome Arm
3HS
Map
Hordeum-OPA-2009-3H2.9
Hordeum-OPA123-2008-3H2.9
Hordeum-OPAConsensus-2011-3H6.31
[ Show Nearby Loci ]
QTL with Locus Marker
MQTL_Du2024.yield-3H.1
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_4975
i_12_31448
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 3_1448
Marker name in barley OPA1 = 12_31448
Original SNP name = U35_4975_534
Most representative HarvEST:Barley Assembly #32 Unigene = 10144
Most representative HarvEST:Barley Assembly #35 Unigene = 4975
HarvEST Unigene 35 Probe Set = Contig13068_at
Unigene 35 Rice Locus = LOC_Os01g02139
Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 0.00000000002
Marker name in barley Pilot OPA3 = 3_1448
Marker name in barley OPA2 = 12_31448
Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 0.00000000002
BLAST hit in the rice genome = expressed protein


Probe for Locus
HAR35_4975
Locus
POPA3_1448
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare