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GrainGenes Marker Report: POPA3_1451

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Locus	POPA3_1451
Type	SNP
Synonym	Other name 12_31451 BOPA2_12_31451 Synonym 12_31451
Chromosome	5H
Chromosome Arm	5HL
Map	Hordeum-OPA-2009-5H 59.4 Hordeum-OPA123-2008-5H 59.4 Hordeum-OPAConsensus-2011-5H 51.51 Hordeum-OWB-OPA2008-5H 66.008
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_5082 i_12_31451
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 3_1451 Marker name in barley OPA1 = 12_31451 Original SNP name = U35_5082_691 Most representative HarvEST:Barley Assembly #32 Unigene = 9165 Most representative HarvEST:Barley Assembly #35 Unigene = 5082 HarvEST Unigene 35 Probe Set = Contig12117_at Unigene 35 Rice Locus = LOC_Os09g10770 Marker name in barley Pilot OPA3 = 3_1451 Marker name in barley OPA2 = 12_31451 Original SNP name = U32_4304_3452 Description for best rice BLAST hit to Unigene 35 member = protein type II DNA topoisomerase VI subunit B, putative, expressed; E value = 1E-159 BLAST hit in the rice genome = type II DNA topoisomerase VI subunit B, putative, expressed
Probe for Locus	HAR35_5082
Locus	POPA3_1451
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare