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GrainGenes Marker Report: POPA3_1463

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Locus
POPA3_1463
Type
SNP
Synonym
Other name12_31463
BOPA2_12_31463
Synonym12_31463
Chromosome
7H
Chromosome Arm
7HS
Map
Hordeum-OPA-2009-7H68.46
Hordeum-OPA123-2008-7H68.46
Hordeum-OPAConsensus-2011-7H61.67
Hordeum-OWB-OPA2008-7H64.14
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_5336
i_12_31463
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 13 ]
Marker name in barley Pilot OPA1 = 3_1463
Marker name in barley OPA1 = 12_31463
Original SNP name = U35_5336_348
Most representative HarvEST:Barley Assembly #32 Unigene = 9079
Most representative HarvEST:Barley Assembly #35 Unigene = 5336
HarvEST Unigene 35 Probe Set = HVSMEm0005N22r2_s_at
Unigene 35 Rice Locus = LOC_Os08g32930
Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 2E-66
Marker name in barley Pilot OPA3 = 3_1463
Marker name in barley OPA2 = 12_31463
Original SNP name = ABC04517_2_289
Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 2E-66
BLAST hit in the rice genome = expressed protein


Probe for Locus
HAR35_5336
Locus
POPA3_1463
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare