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GrainGenes Marker Report: POPA3_1479

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Locus	POPA3_1479
Type	SNP
Synonym	Other name 12_31479 BOPA2_12_31479 Synonym 12_31479
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_566 i_12_31479
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 3_1479 Marker name in barley OPA1 = 12_31479 Original SNP name = U35_566_2493 Most representative HarvEST:Barley Assembly #32 Unigene = 2654 Most representative HarvEST:Barley Assembly #35 Unigene = 566 HarvEST Unigene 35 Probe Set = Contig3822_at Unigene 35 Rice Locus = LOC_Os02g39160 Description for best rice BLAST hit to Unigene 35 member = hydroxymethylbutenyl 4-diphosphate synthase, putative, expressed; E value = 0 BLAST hit in the rice genome = hydroxymethylbutenyl 4-diphosphate synthase, putative, expressed
Probe for Locus	HAR35_566
Locus	POPA3_1479