Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA3_1484

[Submit comment/correction]

Locus	POPA3_1484
Type	SNP
Synonym	Other name 12_31484 BOPA2_12_31484 Synonym 12_31484
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_5904 i_12_31484
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 3_1484 Marker name in barley OPA1 = 12_31484 Original SNP name = U35_5904_393 Most representative HarvEST:Barley Assembly #32 Unigene = 11709 Most representative HarvEST:Barley Assembly #35 Unigene = 5904 HarvEST Unigene 35 Probe Set = Contig16630_at Unigene 35 Rice Locus = LOC_Os01g50320 Description for best rice BLAST hit to Unigene 35 member = surp module family protein, expressed; E value = 4E-56 BLAST hit in the rice genome = surp module family protein, expressed
Probe for Locus	HAR35_5904
Locus	POPA3_1484