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GrainGenes Marker Report: POPA3_1485

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Locus	POPA3_1485
Type	SNP
Synonym	Other name 12_31485 BOPA2_12_31485 Synonym 12_31485
Chromosome	6H
Chromosome Arm	6HS
Map	Barley, 2012 9KSNP 6H 31.9 Hordeum-OPA-2009-6H 30.06 Hordeum-OPA123-2008-6H 30.06 Hordeum-OPAConsensus-2011-6H 32.98
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_5918 i_12_31485
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 14 ] Marker name in barley Pilot OPA1 = 3_1485 Marker name in barley OPA1 = 12_31485 Original SNP name = U35_5918_746 Most representative HarvEST:Barley Assembly #32 Unigene = 13991 Most representative HarvEST:Barley Assembly #35 Unigene = 5918 HarvEST Unigene 35 Probe Set = Contig17762_s_at; Contig17763_at Unigene 35 Rice Locus = LOC_Os05g25780 Description for best rice BLAST hit to Unigene 35 member = rhodanese like protein, putative, expressed; E value = 1E-130 Marker name in barley Pilot OPA3 = 3_1485 Marker name in barley OPA2 = 12_31485 Original SNP name = U32_6987_1361 HarvEST Unigene 35 Probe Set = Contig17762_s_at, Contig17763_at Description for best rice BLAST hit to Unigene 35 member = protein rhodanese like protein, putative, expressed; E value = 1E-130 BLAST hit in the rice genome = rhodanese like protein, putative, expressed
Probe for Locus	HAR35_5918
Locus	POPA3_1485
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare