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GrainGenes Marker Report: POPA3_1489

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Locus	POPA3_1489
Type	SNP
Chromosome	7H
Chromosome Arm	7HL
Map	Barley-Core-2014_7H 157.86 Hordeum-OPA-2009-7H 150.58 Hordeum-OPA123-2008-7H 150.58 Hordeum-OPAConsensus-2011-7H 153.16 Hordeum-OWB-OPA2008-7H 170.432
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008 Barley, USDA Core, 2014 Consensus
Probe	HAR35_6121
Reference	Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 3_1489 Most representative HarvEST:Barley Assembly #32 Unigene = 13860 Most representative HarvEST:Barley Assembly #35 Unigene = 6121 HarvEST Unigene 35 Probe Set = Contig17944_at Unigene 35 Rice Locus = LOC_Os06g50890 Description for best rice BLAST hit to Unigene 35 member = transformer-2 protein, putative, expressed; E value = 2E-54 Marker name in barley Pilot OPA3 = 3_1489 Original SNP name = U35_6121_452 Description for best rice BLAST hit to Unigene 35 member = protein transformer-2 protein, putative, expressed; E value = 2E-54 BLAST hit in the rice genome = transformer-2 protein, putative, expressed
Probe for Locus	HAR35_6121
Locus	POPA3_1489
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare