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GrainGenes Marker Report: POPA3_1492

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Locus	POPA3_1492
Type	SNP
Synonym	Other name 12_31492 BOPA2_12_31492 Synonym 12_31492
Chromosome	5H
Chromosome Arm	5HS
Map	Hordeum-OPA-2009-5H 47.39 Hordeum-OPA123-2008-5H 47.39 Hordeum-OPAConsensus-2011-5H 38.78 Hordeum-OWB-OPA2008-5H 57.263
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_623 i_12_31492
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 14 ] Marker name in barley Pilot OPA1 = 3_1492 Marker name in barley OPA1 = 12_31492 Original SNP name = U35_623_856 Most representative HarvEST:Barley Assembly #32 Unigene = 1696 Most representative HarvEST:Barley Assembly #35 Unigene = 623 HarvEST Unigene 35 Probe Set = Contig2503_at; Contig2503_s_at Unigene 35 Rice Locus = LOC_Os12g40890 Description for best rice BLAST hit to Unigene 35 member = OsIAA30 - Auxin-responsive Aux/IAA gene family member, expressed; E value = 1E-101 Marker name in barley Pilot OPA3 = 3_1492 Marker name in barley OPA2 = 12_31492 Original SNP name = ABC08682_1_180 HarvEST Unigene 35 Probe Set = Contig2503_at, Contig2503_s_at Description for best rice BLAST hit to Unigene 35 member = protein OsIAA30 - Auxin-responsive Aux/IAA gene family member, expressed; E value = 1E-101 BLAST hit in the rice genome = OsIAA30 - Auxin-responsive Aux/IAA gene family member, expressed
Probe for Locus	HAR35_623
Locus	POPA3_1492
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare