Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA3_1493

[Submit comment/correction]

Locus	POPA3_1493
Type	SNP
Synonym	Synonym 12_31493
Chromosome	4H
Chromosome Arm	4HL
Map	Hordeum-OPA-2009-4H 66 Hordeum-OPA123-2008-4H 66 Hordeum-OPAConsensus-2011-4H 77.66
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_6233
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 3_1493 Marker name in barley OPA1 = 12_31493 Original SNP name = U35_6233_449 Most representative HarvEST:Barley Assembly #32 Unigene = 12057 Most representative HarvEST:Barley Assembly #35 Unigene = 6233 HarvEST Unigene 35 Probe Set = Contig15152_at Unigene 35 Rice Locus = LOC_Os12g07210 Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 0.00001 Marker name in barley Pilot OPA3 = 3_1493 Marker name in barley OPA2 = 12_31493 Original SNP name = U32_8515_734 Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 0.00001 BLAST hit in the rice genome = expressed protein
Probe for Locus	HAR35_6233
Locus	POPA3_1493
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare