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GrainGenes Marker Report: POPA3_1506

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Locus	POPA3_1506
Type	SNP
Synonym	Other name 12_31506 BOPA2_12_31506 Synonym 12_31506
Chromosome	2H
Chromosome Arm	2HL
Map	Barley, 2012 9KSNP 2H 142.4 Hordeum-OPA-2009-2H 152.79 Hordeum-OPA123-2008-2H 152.79 Hordeum-OPAConsensus-2011-2H 166.6
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_6860 i_12_31506
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 3_1506 Marker name in barley OPA1 = 12_31506 Original SNP name = U35_6860_433 Most representative HarvEST:Barley Assembly #32 Unigene = 13630 Most representative HarvEST:Barley Assembly #35 Unigene = 6860 HarvEST Unigene 35 Probe Set = HS08H22u_s_at Unigene 35 Rice Locus = LOC_Os04g58550 Description for best rice BLAST hit to Unigene 35 member = acyl-CoA-binding domain-containing protein 6, putative, expressed; E value = 2E-53 Marker name in barley Pilot OPA3 = 3_1506 Marker name in barley OPA2 = 12_31506 Description for best rice BLAST hit to Unigene 35 member = protein acyl-CoA-binding domain-containing protein 6, putative, expressed; E value = 2E-53 BLAST hit in the rice genome = acyl-CoA-binding domain-containing protein 6, putative, expressed
Probe for Locus	HAR35_6860
Locus	POPA3_1506
Synonym	Synonym CDO36
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare