Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA3_1525

[Submit comment/correction]

Locus	POPA3_1525
Type	SNP
Synonym	Other name 12_31525 BOPA2_12_31525 Synonym 12_31525
Chromosome	3H
Chromosome Arm	3HL
Map	Barley, 2012 9KSNP 3H 108.1 Hordeum-OPA-2009-3H 126.27 Hordeum-OPA123-2008-3H 126.27 Hordeum-OPAConsensus-2011-3H 134.05 Hordeum-OWB-OPA2008-3H 149.378
	[ Show Nearby Loci ]
Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_835 i_12_31525
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 3_1525 Marker name in barley OPA1 = 12_31525 Original SNP name = U35_835_1187 Most representative HarvEST:Barley Assembly #32 Unigene = 1768 Most representative HarvEST:Barley Assembly #35 Unigene = 835 HarvEST Unigene 35 Probe Set = Contig2621_at Unigene 35 Rice Locus = LOC_Os01g66520 Description for best rice BLAST hit to Unigene 35 member = serine/threonine-protein kinase RIO2, putative, expressed; E value = 0 Marker name in barley Pilot OPA3 = 3_1525 Marker name in barley OPA2 = 12_31525 Original SNP name = ABC07681_1_539 Description for best rice BLAST hit to Unigene 35 member = protein serine/threonine-protein kinase RIO2, putative, expressed; E value = 0 BLAST hit in the rice genome = serine/threonine-protein kinase RIO2, putative, expressed
Probe for Locus	HAR35_835
Locus	POPA3_1525
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare