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GrainGenes Marker Report: POPA3_1532

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Locus	POPA3_1532
Type	SNP
Chromosome	1H
Chromosome Arm	1HL
Map	Hordeum-OPA-2009-1H 60.77 Hordeum-OPA123-2008-1H 60.77 Hordeum-OWB-OPA2008-1H 67.569
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Probe	HAR35_8839
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 3_1532 Most representative HarvEST:Barley Assembly #32 Unigene = 22125 Most representative HarvEST:Barley Assembly #35 Unigene = 8839 HarvEST Unigene 35 Probe Set = Contig23964_at Unigene 35 Rice Locus = LOC_Os05g30190 Description for best rice BLAST hit to Unigene 35 member = phytochrome A-associated F-box protein, putative, expressed; E value = 2E-24 Marker name in barley Pilot OPA3 = 3_1532 Description for best rice BLAST hit to Unigene 35 member = protein phytochrome A-associated F-box protein, putative, expressed; E value = 2E-24 BLAST hit in the rice genome = phytochrome A-associated F-box protein, putative, expressed
Probe for Locus	HAR35_8839
Locus	POPA3_1532
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare