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GrainGenes Marker Report: Rht-D1 (Triticum)

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Gene	Rht-D1 (Triticum)
Synonym	Other name Rht2 Allan RE (1970) Differentiating between two Norin 10/Brevor 14 semi-dwarf genes in a common genetic background. Seiken Ziho 22:83-90. Sd2 Allan RE (1970) Differentiating between two Norin 10/Brevor 14 semi-dwarf genes in a common genetic background. Seiken Ziho 22:83-90. Synonym Rht-D1
Gene Class	Reduced height
Allele	Rht-D1a (Triticum) Rht-D1b (Triticum) Rht-D1c (Triticum) Rht-D1d (Triticum)
Locus	Rht-D1
Candidate Locus	TraesCS4D02G040400.1
Reference	[ Hide all but 1 of 17 ] Cheng S et al. (2024) Harnessing Landrace Diversity Empowers Wheat Breeding for Climate Resilience Nature. Rasheed A et al. (2023) Genome-Informed Discovery of Genes and Framework of Functional Genes in Wheat The Wheat Genome 9. Wilhelm EP et al. (2013) Genetic characterization and mapping of the Rht-1 homoeologs and flanking sequences in wheat. Theoretical and Applied Genetics 126:1321-1336. Singh RP et al. (2001) Grain yield and other traits of tall and dwarf isolines of modern bread and durum wheats. Euphytica 119:241-244. Peng JR et al. (1999) 'Green revolution' genes encode mutant gibberellin response modulators. Nature 400:256-261. Sourdille P et al. (1998) Linkage between RFLP molecular markers and the dwarfing genes Rht-B1 and Rht-D1 in wheat. Hereditas 128:41-46. Boerner A et al. (1996) The relationship between the dwarfing genes of wheat and rye. Euphytica 89:69-75. Gale MD et al. (1995) Genetic Maps of Hexaploid Wheat Proceedings of the 8th International Wheat Genetics Symposium 1:29-40. Singh RP et al. (1989) Cataloguing dwarfing genes Rht1 and Rht2 in germplasm used by the bread wheat breeding program at CIMMYT. Cereal Research Communications 17:273-279. Gale MD and King RW (1988) Semi-dwarf genes in Australian wheats. Agricultural Science 1:18-20. Gale MD and Youssifian S (1983) Pleiotropic effects of the Norin 10 dwarfing genes Rht1 and Rht2 and interactions in response to chlormequat. Proceedings of the 6th International Wheat Genetics Symposium 271-277. Gale MD et al. (1982) The Analysis and Evaluation of Semi-dwarfing Genes in Wheat, including a Major Height-reducing Gene in the Variety 'Sava'. Semi-dwarf Cereal Mutants and their Use in Cross Breeding 7-23. Gale MD et al. (1981) A classification of the Norin 10 and Tom Thumb dwarfing genes in British, Mexican, Indian and other hexaploid bread wheat varieties. Euphytica 30:355-361. Nelson W et al. (1980) Norin 10 dwarfing genes present in lines used in the CIMMYT wheat breeding programme. Cereal Research Communications 8:573-574. Gale MD and Marshall GA (1979) A classification of the Norin 10 and Tom Thumb dwarfing genes in hexaploid bread wheat. Proceedings of the 5th International Wheat Genetics Symposium 995-1001. Fick GN and Qualset CO (1973) Genes for Dwarfness in Wheat, Triticum aestivum L. Genetics 75:531-539. Allan RE et al. (1968) Inheritance and Differentiation of Semidwarf Culm Length of Wheat. Crop Science 8:701-704.
URL	Rht-D1 gene at Komugi: Catalogue of Gene Symbols for Wheat
Chromosome	4D Gale MD et al. (1975) The chromosomal location of a major dwarfing gene from Norin 10 in new British semi-dwarf wheats. Heredity 35:417-421. Izumi N et al. (1981) A dominant gene of dwarfism located on chromosome 4D in Triticum aestivum cv. Ai-bian1 Wheat Information Service 53:21-24. Wang YC et al. (1982) Monosomic analysis of height in the wheat variety Aibian 1. Plant Breeding Abstracts 53:427.
Chromosome Arm	4DS McVittie JA et al. (1978) The intra-chromosomal mapping of the Norin 10 and Tom Thumb genes. Heredity 40:67-70. Derera NF (1982) The harmful harvest rain. Journal of the Australian Institute of Agricultural Science 48:67-75. Boerner A et al. (1996) The relationship between the dwarfing genes of wheat and rye. Euphytica 89:69-75.
Germplasm	Hexaploid stock Combe Hu ML and Konzak CF (1974) Genetic association of gibberellic acid insensitivity and semi-dwarfing in hexaploid wheat. Annual Wheat Newsletter 20:184-185. [ Show all 12 ]
Comment	Rht-B1 and Rht-D1 were described as independent and partially recessive in Norin 10-Brevor 14 (Allan et al. 1968) and independent and highly recessive in Olesen and D6301 (Fick and Qualset, 1973). [ Show all 6 ]
Clone	Rht-D1_SNP TraesCS4D02G040400
Sequence	TraesCS4D02G040400.1
2 Point Data	Rht-D1
Info Source	McIntosh RA et al. (2013) Catalogue of Gene Symbols for Wheat- 2013 Edition Catalogue of Gene Symbols for Wheat.
Data Curator	Cooper, Laurel Mar-2021 Hart, Gary E. 95.08.24 Matthews, David E. 2006.02
Locus Associated with Gene	Rht-D1
Type	Gene Trait
Chromosome	4D
Chromosome Arm	4DS
Map	Conan/Reeder-1D 51.6826 Wheat, Avalon x Cadenza 4D 0 Wheat-2014-Consensus-Ug99-Update_4D 0 Wheat-Composite2004-4D 44
	[ Show Nearby Loci ]
In QTL	QHt.crc-4D
Map Data	Wheat, Avalon x Cadenza Wheat, Conan x Reeder Wheat-2014-Consensus-Ug99-Update
2 Point Data	Rht-D1
Species	Triticum aestivum
Probe	DF-MR2 Ellis MH et al. (2002) 'Perfect' markers for the Rht-B1b and Rht-D1b dwarfing genes in wheat Theoretical and Applied Genetics 105:1038-1042. DF2-WR2 Ellis MH et al. (2002) 'Perfect' markers for the Rht-B1b and Rht-D1b dwarfing genes in wheat Theoretical and Applied Genetics 105:1038-1042. Rht-D1a Rht-D1b
Associated Gene	Rht-D1 (Triticum)
Gene Class	Reduced height
Reference	Ellis MH et al. (2002) 'Perfect' markers for the Rht-B1b and Rht-D1b dwarfing genes in wheat Theoretical and Applied Genetics 105:1038-1042. MAS Wheat. Functional Markers for genes affecting agronomic traits in wheat MAS Wheat. Marker Assisted Selection in Wheat.
Data Source	Soria, Marcelo A.
Remark	Trait marker Rht-D1 Nearby marker on Composite map: Xwmc48b Position on Composite map estimated by GrainGenes. (curator note, VCB, July 2019). Although the chromosome 4D map in the Yr genes and QTL dataset has two closely linked loci for reduced height, rht-4D and Rht2, it is likely that these and Rht-D1 are all the same gene
Locus Candidate for Gene	TraesCS4D02G040400.1
Type	gene
Synonym	Synonym TraesCS4D03G0067100
Chromosome	4D
Species	Triticum aestivum
Probe	TraesCS4D02G040400
Reference	IWGSC et al. (2018) Shifting the limits in wheat research and breeding using a fully annotated reference genome Science 361.

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