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GrainGenes Marker Report: Rrn5S1

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Locus	Rrn5S1
Type	RFLP
Synonym	Synonym Rrn5S1
Chromosome	2H
Chromosome Arm	2HL
Map	[ Hide all but 1 of 13 ] Barley-Consensus-2H 18.6 Barley-Consensus2-2H 88.2 Hordeum-Bins-2H 94.7 Hordeum-Consensus2005-SNP-2H 86.004 Hordeum-NABGMP1-2H 96.9 Hordeum-QTLConsensus-Abiotic-2H 86 Hordeum-QTLConsensus-Agronomic-2H 86 Hordeum-StMo-SNP-2H 85.9 Hordeum-SxM-base-2H 92.5 Hordeum-SxM-FeedQTL-2H 96.9 Hordeum-SxM-SSAP-2H 95.3 Hv-Consensus2006-Marcel-2H 87.35 Hv-Integrated2009-2H 80.4
	[ Show Nearby Loci ]
QTL with Locus Marker	QSss.StMo-2H.2
Map Data	Barley consensus [ Show all 13 ]
Probe	Rrn5S1
Reference	Rodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source	Blake, Tom 05.04.19
Remark	Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Possible Orthologs	Rrn5S2
Probe	Rrn5S1
Locus	Rrn5S1 Rrn5S1-2H
Reference	Kolchinsky A et al. (1991) "Portraying" of plant genomes using polymerase chain reaction amplification of ribosomal 5S genes. Genome 34:1028-1031.
Type	STS
PCR primers	L 5'-TTT AGT GCT GGT ATG ATC GC-3' R 5'-TGG GAA GTC CTC GTG TTG CA-3'
Linkage Group	2
Source Gene Class	5S ribosomal RNA
Source Species	Hordeum vulgare