GrainGenes Marker Report: Xcdo400-5A
Locus
Xcdo400-5A
Type
RFLP
Chromosome
5A
Chromosome Arm
5AL
Map
5AL, q deletions 38 Ta-Physical-Sarma-5A 0.66
[ Show Nearby Loci ]
Breakpoint Interval
5AL8-0.64-0.67 5AL-q29/5AL-q20
Map Data
5AL, CS q deletions, physical Wheat, Physical, Group 5
Probe
CDO400
Homology
BAB05976.1 e-value: 1.1 (AP001514) BH2257~unknown conserved protein in B. subtilis [Bacillus halodurans] NP_113448.1 e-value: 7e-04 ubiquitin-conjugating enzyme E2-21 KD [Guillardia theta]
Possible Orthologs
cdo400
[ Show all 8 ]
Probe for Locus
CDO400
Locus
[ Hide all but 1 of 12 ] CDO400b CDO400a Xcdo400 cdo400 HD064E22 HD057F8 D1.1_ctg3662 Xcdo400-5B Xcdo400-5D Xcdo400-5A CDO400 cdo400y
Synonym
Synonym HAR35_19904
Reference
Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
General Remarks
Uni-ZAP XR library OatUni-ZAPXR [c]
Type
cDNA
Sequence
BE439060
[ Show all 6 ]
Polymorphism
CDO400 DraI
Linkage Group
1L, 5L
Insert Enzyme
EcoRI XhoI
Source Species
Avena sativa
Source Germplasm
Brooks (oat)
Source Tissue
etiolated leaf
Insert Size
0.8
PCR size
0.8
GrainGenes Marker Report: Xcdo400-5A
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