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GrainGenes Marker Report: Xcdo405

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Locus	Xcdo405
Type	RFLP
Chromosome	2D 6R
Chromosome Arm	2DS 2HS 6RL
Map	Hbulbosum-PB1xPB11-2 52 [ Show all 10 ]
	[ Show Nearby Loci ]
QTL with Locus Marker	Groat percentage, KxO-8-a Test weight, KxO-8-a Test weight, KxO-8-b Test weight, KxO-8-c
Breakpoint Interval	0/2DS-3 2S-0.53-0.75
Map Data	H. bulbosum, PB1 x PB11 [ Show all 10 ]
Species	Triticum aestivum
Probe	CDO405
Homology	CAB81517.1 e-value: 7e-10 (AL161588) ATM-like protein [Arabidopsis thaliana]
Image	CDO405 KO autoradiogram
Reference	Jin H et al. (2000) Combined AFLP and RFLP mapping in two hexaploid oat recombinant inbred populations Genome 94-101. Boyko EV et al. (1999) A high-density genetic linkage map of Aegilops tauschii, the D-genome progenitor of bread wheat. Theoretical and Applied Genetics 99:16-26.
Possible Orthologs	CDO405 [ Show all 16 ]
Probe for Locus	CDO405
Locus	CDO405 [ Show all 18 ]
Synonym	Synonym HAR35_3670
Reference	Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
General Remarks	Uni-ZAP XR library OatUni-ZAPXR [c] OatUni-ZAPXR
Type	cDNA
Sequence	[ Hide all but 1 of 6 ] BE439061 BE439112 CDO405_WHE2F0071 CDO405_WHE2F0072 AA231912 AA231760
Polymorphism	CDO405 EcoRI Durums CDO405 EcoRI CDO405 EcoRV
Linkage Group	2S
Insert Enzyme	EcoRI XhoI
Source Species	Avena sativa
Source Germplasm	Brooks (oat)
Source Tissue	etiolated leaf
Insert Size	1.8
PCR size	1.8