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GrainGenes Marker Report: Xcdo580

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Locus	Xcdo580
Type	RFLP
Chromosome	1A 1D 1R
Chromosome Arm	1AS 1DS 1RS
Map	[ Hide all but 1 of 20 ] 1AS, T.m. G1777 x G2528 -3.4 Avena-Sorrells-A 47 Avena-Yu-A 428.5 Oat-1996-KxO_4 39.3 Oat-2001-KxO_4-12 40 Oat-2002-OxT-QTL_11 0 Oat-KxO-4 39.3 Oat-KxO/AFLP-4 48 Oat-KxO/Q-4 40.3 Rye-2009-Consensus-1R 15.8 Secale-PxP-1 35.8 Secale-PxP-update-1R 48 Secale-UxE-1 12.7 Ta-Dubcovsky-1A -2 Ta-Physical-Gill-1ABD -81 Ta-Physical-Gill-1D -2.02 Tm-Dubcovsky-1A -4.1 TmTa-Dubcovsky-1A -2.5 Wheat-Composite2004-1A 43 Wheat-Composite2004-1D 53
	[ Show Nearby Loci ]
QTL with Locus Marker	Test weight, KxO-4-b
Breakpoint Interval	1DS-5/1DS-4 1S-0.81-0.81
Map Data	1AS, T.m. G1777 x G2528 [ Show all 18 ]
Species	Triticum aestivum
Probe	CDO580
Homology	T47470 e-value: 1e-33 isovaleryl-CoA-dehydrogenase precursor (IVD) - Arabidopsis thaliana [Arabidopsis thaliana]
Image	CDO580 KO autoradiogram
Reference	Jin H et al. (2000) Combined AFLP and RFLP mapping in two hexaploid oat recombinant inbred populations Genome 94-101. Boyko EV et al. (1999) A high-density genetic linkage map of Aegilops tauschii, the D-genome progenitor of bread wheat. Theoretical and Applied Genetics 99:16-26.
Possible Orthologs	CDO580 [ Show all 13 ]
Probe for Locus	CDO580
Locus	CDO580 [ Show all 19 ]
Synonym	Synonym HAR35_15747 HAR35_15748 HAR35_38596
Reference	Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
General Remarks	Uni-ZAP XR library OatUni-ZAPXR [c]
Type	cDNA
Sequence	BE439190 [ Show all 6 ]
Polymorphism	CDO580 EcoRV CDO580 XbaI
Linkage Group	1S
Insert Enzyme	EcoRI XhoI
Source Species	Avena sativa
Source Germplasm	Brooks (oat)
Source Tissue	etiolated leaf
Insert Size	1.3
PCR size	1.3