Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: Xcdo580

[Submit comment/correction]

Locus	Xcdo580
Type	RFLP
Chromosome	1A 1D 1R
Chromosome Arm	1AS 1DS 1RS
Map	1AS, T.m. G1777 x G2528 -3.4 [ Show all 20 ]
	[ Show Nearby Loci ]
QTL with Locus Marker	Test weight, KxO-4-b
Breakpoint Interval	1DS-5/1DS-4 1S-0.81-0.81
Map Data	[ Hide all but 1 of 18 ] 1AS, T.m. G1777 x G2528 Diploid Oat, AFLP Diploid Oat, Cornell2 Oat, KxO Oat, KxO, AFLP Oat, KxO/QTL Oat-1996-KxO Oat-2001-KxO Oat-2002-OxT-QTL Rye, P87 x P105 Rye, P87 x P105, update Rye, UC90 x E-line Rye_2009_consensus T. monococcum, G1777 x G2528 Triticum, CS-G1777 DS1A^m^(1A) RSL Wheat, Composite, 2004 Wheat, CS x CS-CNN DS1A Wheat, Physical
Species	Triticum aestivum
Probe	CDO580
Homology	T47470 e-value: 1e-33 isovaleryl-CoA-dehydrogenase precursor (IVD) - Arabidopsis thaliana [Arabidopsis thaliana]
Image	CDO580 KO autoradiogram
Reference	Jin H et al. (2000) Combined AFLP and RFLP mapping in two hexaploid oat recombinant inbred populations Genome 94-101. Boyko EV et al. (1999) A high-density genetic linkage map of Aegilops tauschii, the D-genome progenitor of bread wheat. Theoretical and Applied Genetics 99:16-26.
Possible Orthologs	CDO580 [ Show all 13 ]
Probe for Locus	CDO580
Locus	CDO580 [ Show all 19 ]
Synonym	Synonym HAR35_15747 HAR35_15748 HAR35_38596
Reference	Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
General Remarks	Uni-ZAP XR library OatUni-ZAPXR [c]
Type	cDNA
Sequence	BE439190 [ Show all 6 ]
Polymorphism	CDO580 EcoRV CDO580 XbaI
Linkage Group	1S
Insert Enzyme	EcoRI XhoI
Source Species	Avena sativa
Source Germplasm	Brooks (oat)
Source Tissue	etiolated leaf
Insert Size	1.3
PCR size	1.3