Query (optional)   in Class  

GrainGenes Marker Report: Xgwm156-5A

[Submit comment/correction]

Locus
Xgwm156-5A
Type
Microsatellite
Chromosome
5A
Chromosome Arm
5AL
Map
Chinese_Spring_Deletion_SSR_5A0.175
[ Show all 7 ]
[ Show Nearby Loci ]
Breakpoint Interval
C-5AL12-0.35
5AL12-0.35-0.57
Map Data
[ Hide all but 1 of 8 ]
Durum wheat, Svevo x Ciccio
T. turgidum, Messapia x dicoccoides, SSR
Wheat, Arina x Forno
Wheat, Consensus SSR, 2004
Wheat, Physical, SSR
Wheat, Synthetic x Opata, BARC
Wheat, Synthetic x Opata, GPW
Wheat, Synthetic x Opata, SSR
Species
Triticum aestivum
Probe
WMS156
Reference
ReferenceSomers DJ et al. (2004) A high-density wheat microsatellite consensus map for bread wheat (Triticum aestivum L.) Theoretical and Applied Genetics 109:1105-1114.
ReferencePaillard S et al. (2003) An integrative genetic linkage map of winter wheat (Triticum aestivum L.) Theoretical and Applied Genetics 107:1235-1242.
ReferenceRoder MS et al. (1998) A microsatellite map of wheat Genetics 149:2007-2023.
Data Source
Roeder, Marion S.98.09.15
Remark
In Map Ta-Synthetic/Opata-SSR-5A, the interval most likely to contain locus is between Xbcd1355 and Xcdo412
Possible Orthologs
gwm156
[ Show all 10 ]
Probe for Locus
WMS156
Locus
Xgwm156-3B
[ Show all 11 ]
Reference
ReferenceRoder MS et al. (1998) A microsatellite map of wheat Genetics 149:2007-2023.
General Remarks
Insert contains repeat (GT)14
PRIMER SEQUENCE IS AVAILABLE FOR PUBLIC RESEARCH ONLY. REQUESTS FOR COMMERCIAL USE SHOULD BE DIRECTED TO M. ROEDER.
Type
PCR
SSR
PCR primers
5' CCAACCGTGCTATTAGTCATTC 3'
5' CAATGCAGGCCCTCCTAAC 3'
Amplification Conditions
3 min at 94 deg C; 45 cycles with 1 min at 94 deg C, 1 min at 60 deg C, and 2 min at 72 deg C; and a final extension step of 10 min at 72 deg C
Polymorphism
WMS156
Source Species
Triticum aestivum
Source Germplasm
Chinese Spring