Query (optional)   in Class  

GrainGenes Marker Report: Xgwm161-3D

[Submit comment/correction]

Locus
Xgwm161-3D
Type
Microsatellite
Chromosome
3D
Chromosome Arm
3DS
Map
Chinese_Spring_Deletion_SSR_3D-0.775
[ Show all 8 ]
[ Show Nearby Loci ]
Breakpoint Interval
3DS6-0.55-1.00
Map Data
[ Hide all but 1 of 9 ]
Wheat, Arina x Forno
Wheat, Chinese Spring x SQ1
Wheat, Consensus SSR, 2004
Wheat, Physical, SSR
Wheat, Sphaerococcoid Genes
Wheat, Synthetic x Opata, BARC
Wheat, Synthetic x Opata, GPW
Wheat, Synthetic x Opata, SSR
Wheat, Synthetic x Opata, update
Species
Triticum aestivum
Probe
WMS161
Reference
ReferenceSomers DJ et al. (2004) A high-density wheat microsatellite consensus map for bread wheat (Triticum aestivum L.) Theoretical and Applied Genetics 109:1105-1114.
ReferencePaillard S et al. (2003) An integrative genetic linkage map of winter wheat (Triticum aestivum L.) Theoretical and Applied Genetics 107:1235-1242.
ReferenceSalina E et al. (2000) Microsatellite mapping of the induced sphaerococcoid mutation genes in Triticum aestivum Theoretical and Applied Genetics 100:686-689.
ReferenceRoder MS et al. (1998) A microsatellite map of wheat Genetics 149:2007-2023.
Data Source
Roeder, Marion S.98.09.15
Remark
In Map Ta-Synthetic/Opata-SSR-3D, the interval most likely to contain locus is between Xcdo459 and Xgwm183
Possible Orthologs
Xgwm161
[ Show all 6 ]
Probe for Locus
WMS161
Locus
Xgwm161-3D
[ Show all 7 ]
Reference
ReferenceRoder MS et al. (1998) A microsatellite map of wheat Genetics 149:2007-2023.
General Remarks
Insert contains repeat (CT)15
PRIMER SEQUENCE IS AVAILABLE FOR PUBLIC RESEARCH ONLY. REQUESTS FOR COMMERCIAL USE SHOULD BE DIRECTED TO M. ROEDER.
Type
PCR
SSR
PCR primers
5' GATCGAGTGATGGCAGATGG 3'
5' TGTGAATTACTTGGACGTGG 3'
Amplification Conditions
3 min at 94 deg C; 45 cycles with 1 min at 94 deg C, 1 min at 60 deg C, and 2 min at 72 deg C; and a final extension step of 10 min at 72 deg C
Polymorphism
WMS161
Source Species
Triticum aestivum
Source Germplasm
Chinese Spring