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GrainGenes Marker Report: Xgwm234-5B

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Locus
Xgwm234-5B
Type
Microsatellite
Chromosome
5B
Chromosome Arm
5BS
Map
[ Hide all but 1 of 12 ]
Chinese_Spring_Deletion_SSR_5B-0.76
CS/SQ1-5B6.2
Kofa/UC1113-5B0
P91193D1/P92201D5-5B0
Ta-SSR-2004-5B38.1
Ta-Synthetic/Opata-BARC-5B1.8
Ta-Synthetic/Opata-GPW-5B1
Ta-Synthetic/Opata-SSR-5B-5
Triticum-AxF-5B0
Tt-Oxd-QTL-5B57.3
Tturgidum-JKxC-5B0
Tturgidum-JKxC2-5B91.6
[ Show Nearby Loci ]
Breakpoint Interval
5BS5-0.71-0.81
Map Data
Durum wheat, Kofa x UC1113
[ Show all 13 ]
Species
Triticum aestivum
Probe
WMS234
Reference
ReferenceSomers DJ et al. (2004) A high-density wheat microsatellite consensus map for bread wheat (Triticum aestivum L.) Theoretical and Applied Genetics 109:1105-1114.
ReferencePaillard S et al. (2003) An integrative genetic linkage map of winter wheat (Triticum aestivum L.) Theoretical and Applied Genetics 107:1235-1242.
ReferenceRoder MS et al. (1998) A microsatellite map of wheat Genetics 149:2007-2023.
Data Source
Roeder, Marion S.98.09.15
Remark
In Map Ta-Synthetic/Opata-SSR-5B, the intervals most likely to contain locus are Xbcd873 - Xgwm443 or distal to Xbcd873
Possible Orthologs
Xgwm234
[ Show all 9 ]
Probe for Locus
WMS234
Locus
Xgwm234-5B
[ Show all 10 ]
Reference
ReferenceRoder MS et al. (1998) A microsatellite map of wheat Genetics 149:2007-2023.
General Remarks
Insert contains repeat (CT)16(CA)20
PRIMER SEQUENCE IS AVAILABLE FOR PUBLIC RESEARCH ONLY. REQUESTS FOR COMMERCIAL USE SHOULD BE DIRECTED TO M. ROEDER.
Type
PCR
SSR
PCR primers
5' GAGTCCTGATGTGAAGCTGTTG 3'
5' CTCATTGGGGTGTGTACGTG 3'
Amplification Conditions
3 min at 94 deg C; 45 cycles with 1 min at 94 deg C, 1 min at 55 deg C, and 2 min at 72 deg C; and a final extension step of 10 min at 72 deg C
Polymorphism
WMS234
Source Species
Triticum aestivum
Source Germplasm
Chinese Spring