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GrainGenes Marker Report: Xgwm539-2D

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Locus	Xgwm539-2D
Type	Microsatellite
Chromosome	2D
Chromosome Arm	2DL
Map	Chinese_Spring_Deletion_SSR_2D 0.245 [ Show all 11 ]
	[ Show Nearby Loci ]
QTL with Locus Marker	QFhs.crc-2D
Breakpoint Interval	C-2DL3-0.49
Map Data	[ Hide all but 1 of 11 ] Wheat, Arina x Forno Wheat, Chinese Spring x SQ1 Wheat, Conan x Reeder Wheat, Consensus SSR, 2004 Wheat, Courtot x Chinese Spring, GPW Wheat, Grandin x BR34 Wheat, Physical, SSR Wheat, Synthetic x Opata, BARC Wheat, Synthetic x Opata, GPW Wheat, Synthetic x Opata, SSR Wheat, WxM, FHB QTL
Species	Triticum aestivum
Probe	WMS539
Reference	Somers DJ et al. (2004) A high-density wheat microsatellite consensus map for bread wheat (Triticum aestivum L.) Theoretical and Applied Genetics 109:1105-1114. Paillard S et al. (2003) An integrative genetic linkage map of winter wheat (Triticum aestivum L.) Theoretical and Applied Genetics 107:1235-1242. Somers DJ et al. (2003) Molecular mapping of novel genes controlling Fusarium head blight resistance and deoxynivalenol accumulation in spring wheat Genome 46:555-564. Roder MS et al. (1998) A microsatellite map of wheat Genetics 149:2007-2023.
Data Source	Roeder, Marion S. 98.09.15
Remark	In Map Ta-Synthetic/Opata-SSR-2D, the interval most likely to contain locus is between Xtam8 and Xfbb122
Possible Orthologs	Xgwm539 gwm539-2D gwm539
Probe for Locus	WMS539
Locus	Xgwm539-2D Xgwm539 gwm539 gwm539-2D
Reference	Roder MS et al. (1998) A microsatellite map of wheat Genetics 149:2007-2023.
General Remarks	Insert contains repeat (GA)27 PRIMER SEQUENCE IS AVAILABLE FOR PUBLIC RESEARCH ONLY. REQUESTS FOR COMMERCIAL USE SHOULD BE DIRECTED TO M. ROEDER.
Type	PCR SSR
PCR primers	5' CTGCTCTAAGATTCATGCAACC 3' 5' GAGGCTTGTGCCCTCTGTAG 3'
Amplification Conditions	3 min at 94 deg C; 45 cycles with 1 min at 94 deg C, 1 min at 60 deg C, and 2 min at 72 deg C; and a final extension step of 10 min at 72 deg C
Polymorphism	WMS539
Source Species	Triticum aestivum
Source Germplasm	Chinese Spring