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GrainGenes Marker Report: Xgwm55-6D

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Locus
Xgwm55-6D
Type
Microsatellite
Chromosome
6D
Chromosome Arm
6DS
Map
Chinese_Spring_Deletion_SSR_6D0.145
[ Show all 9 ]
[ Show Nearby Loci ]
QTL with Locus Marker
QGwt.crc-6D
Breakpoint Interval
C-6DL6-0.29
Map Data
Wheat, Arina x Forno
[ Show all 9 ]
Species
Triticum aestivum
Probe
WMS55
Reference
ReferenceSomers DJ et al. (2004) A high-density wheat microsatellite consensus map for bread wheat (Triticum aestivum L.) Theoretical and Applied Genetics 109:1105-1114.
ReferencePaillard S et al. (2003) An integrative genetic linkage map of winter wheat (Triticum aestivum L.) Theoretical and Applied Genetics 107:1235-1242.
ReferenceRoder MS et al. (1998) A microsatellite map of wheat Genetics 149:2007-2023.
Data Source
Roeder, Marion S.98.09.15
Remark
In Map Ta-Synthetic/Opata-SSR-6D, the interval most likely to contain locus is between Xcdo534 and Xfba81
Possible Orthologs
Xgwm55
[ Show all 21 ]
Probe for Locus
WMS55
Locus
[ Hide all but 1 of 21 ]
Xgwm55-2B
Xgwm55
Xgwm55-6D
Xgwm55-2B.2
Xgwm55-2B.1
Xgwm55a
Xgwm55b
gwm55
gwm55a
gwm55a-2B
gwm55b
gwm55b-2B
gwm55c
gwm55c-2B
Xgwm55a-2B
Xgwm55b-2B
gwm55-2B.1
gwm55-2B.2
gwm55-2B.3
gwm55-2B.4
gwm55-6D
Reference
ReferenceRoder MS et al. (1998) A microsatellite map of wheat Genetics 149:2007-2023.
General Remarks
Insert contains repeat (TC)3(T)3(CT)17
PRIMER SEQUENCE IS AVAILABLE FOR PUBLIC RESEARCH ONLY. REQUESTS FOR COMMERCIAL USE SHOULD BE DIRECTED TO M. ROEDER.
Type
PCR
SSR
PCR primers
5' GCATCTGGTACACTAGCTGCC 3'
5' TCATGGATGCATCACATCCT 3'
Amplification Conditions
3 min at 94 deg C; 45 cycles with 1 min at 94 deg C, 1 min at 60 deg C, and 2 min at 72 deg C; and a final extension step of 10 min at 72 deg C
Polymorphism
WMS55
Source Species
Triticum aestivum
Source Germplasm
Chinese Spring