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GrainGenes Marker Report: Xgwm639-5B

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Locus
Xgwm639-5B
Type
Microsatellite
Chromosome
5B
Chromosome Arm
5BL
Map
Chinese_Spring_Deletion_SSR_5B0.65
[ Show all 8 ]
[ Show Nearby Loci ]
QTL with Locus Marker
QGw1.inra-5B
Breakpoint Interval
5BL1-0.55-0.75
Map Data
T. turgidum, Messapia x dicoccoides, SSR
[ Show all 8 ]
Species
Triticum aestivum
Probe
WMS639
Reference
ReferenceSomers DJ et al. (2004) A high-density wheat microsatellite consensus map for bread wheat (Triticum aestivum L.) Theoretical and Applied Genetics 109:1105-1114.
ReferencePaillard S et al. (2003) An integrative genetic linkage map of winter wheat (Triticum aestivum L.) Theoretical and Applied Genetics 107:1235-1242.
ReferenceRoder MS et al. (1998) A microsatellite map of wheat Genetics 149:2007-2023.
Data Source
Roeder, Marion S.98.09.15
Remark
In Map Ta-Synthetic/Opata-SSR-5B, the interval most likely to contain locus is between Xabg473 and Xmwg914
Possible Orthologs
Xgwm639
[ Show all 20 ]
Probe for Locus
WMS639
Locus
[ Hide all but 1 of 23 ]
Xgwm639.1-5A
Xgwm639.2-5B
Xgwm639-5D
Xgwm639.2
Xgwm639.1
Xgwm639-5A
Xgwm639-5B
Xgwm639
Xgwm639.3
Fr-B2
gwm639
gwm639a
gwm639a-5A
gwm639a-5B
gwm639b
gwm639b-5B
gwm639-5A
gwm639-5A.1
gwm639-5A.2
gwm639-5B.1
gwm639-5B.2
gwm639-5B.3
Xgwm639b-5A
Reference
ReferenceRoder MS et al. (1998) A microsatellite map of wheat Genetics 149:2007-2023.
General Remarks
Insert contains repeat (GA)19
PRIMER SEQUENCE IS AVAILABLE FOR PUBLIC RESEARCH ONLY. REQUESTS FOR COMMERCIAL USE SHOULD BE DIRECTED TO M. ROEDER.
Type
PCR
SSR
PCR primers
5' CTCTCTCCATTCGGTTTTCC 3'
5' CATGCCCCCCTTTTCTG 3'
Amplification Conditions
3 min at 94 deg C; 45 cycles with 1 min at 94 deg C, 1 min at 55 deg C, and 2 min at 72 deg C; and a final extension step of 10 min at 72 deg C
Polymorphism
WMS639
Source Species
Triticum aestivum
Source Germplasm
Chinese Spring