GrainGenes Marker Report: Xwmc161b
Locus
Xwmc161b
Type
Microsatellite
Chromosome
5D
Map
Wheat-Composite2004-5D 116
[ Show Nearby Loci ]
Map Data
Wheat, Composite, 2004
Probe
WMC161
Possible Orthologs
[ Hide all but 1 of 17 ] Xwmc161 Xwmc161-4A Xwmc161-5D Xwmc161a wmc161 wmc161_1 wmc161b-4A wmc161a-4A wmc161b wmc161a wmc161_2 wmc161-4A.1 wmc161-4A.2 wmc161-4A wmc161-4A.3 wmc161-5D.1 wmc161-5D.2
Probe for Locus
WMC161
Locus
Xwmc161-4A
[ Show all 18 ]
Reference
Somers DJ and Isaac P (2004) SSRs from the Wheat Microsatellite Consortium.
General Remarks
Wheat Microsatellite Consortium Project 1, Plate reference 11f6 Donor: Rogers, Monsanto AGR204.46.SEQ No overlap between forward and reverse sequences. Insert appears to contain multiple inserts (2) joined by linker sequence at 334-341. Trimmed to insert at both ends. (GT)25 245 to 294. Reverse primer begins GT (first part of Rsa1 site in the genome - does not appear in sequence above as replaced by linker). Bases 1 to 279 show homology to 12h6.1 bases 1 to 279 (279 in longest run, maxScore = 211). Bases 362 to 639 show homology to 12h6.2 bases 50 to 327 (278 in longest run, maxScore = 239).
Type
PCR SSR
PCR primers
Forward AccTTcTTTgggATggAAgTAA at 172 length 22 bases, Tm 61
Reverse gTAcTgAAccAcTTgTAAcgcA at 312 length 22 bases, Tm 60
Amplification Conditions
61C anneal, polymorphic product on agarose; 61C anneal, polymorphic on acrylamide;
Sequence
WMC161
Source Species
Triticum aestivum
GrainGenes Marker Report: Xwmc161b
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