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GrainGenes Marker Report: Yr5 (Triticum)

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Gene	Yr5 (Triticum)
Gene Class	Reaction to Puccinia striiformis Westend.
Locus	Yr5
Candidate Locus	IWA4096 IWA6121 IWA7850
Reference	Naruoka Y et al. (2016) Identification and Validation of SNP Markers Linked to the Stripe Rust Resistance Gene Yr5 in Wheat Crop Science 56:3055-3065. Zhang P et al. (2009) Wheat stripe rust resistance genes Yr5 and Yr7 are allelic Theoretical and Applied Genetics 120:25-29. Sun Q et al. (2002) Microsatellite marker for yellow rust resistance gene Yr5 in wheat introgressed from spelt wheat Plant Breeding 121:539-541. Macer RCF (1966) The formal and monosomic genetic analysis of stripe rust (Puccinia striiformis) resistance in wheat. Proceedings of the 2nd International Wheat Genetics Symposium, Hereditas Supplement, Lund, Sweden 2:127-142. Dubcovsky J MAS Wheat. Bringing Genomics to the Wheat Fields/ Disease resistance. Stripe Rust Resistance. Yr5 MAS Wheat. Marker Assisted Selection in Wheat.
URL	Gene record in the Catalog of Gene Symbols for Wheat (Komugi) Protocol for Yr5 at MASwheat
QTL Associated with Gene	qNV.Yr-2B.1 Yr5
Chromosome	2B
Chromosome Arm	2BL
Germplasm	Hexaploid stock E5557 PBA-41-935 Plant Breeding Abstracts 41:935. [ Show all 8 ]
Comment	Hexaploid stocks: T. spelta album (627). Seven spelt accessions from Europe and Iran (458).
Wheat Gene Catalog Reference	627 Macer RCF (1966) The formal and monosomic genetic analysis of stripe rust (Puccinia striiformis) resistance in wheat. Proceedings of the 2nd International Wheat Genetics Symposium, Hereditas Supplement, Lund, Sweden 2:127-142.
Info Source	McIntosh RA et al. (1995) Catalogue of gene symbols for wheat. Proceedings of the 8th International Wheat Genetics Symposium 1333-1500.
Data Curator	Hart, Gary E. 95.08.24
Locus Associated with Gene	Yr5
Type	Gene Trait
Chromosome	2B
Chromosome Arm	2B 2BL
Map	Triticum-Genes-2B 15 Wheat, Yr genes and QTL 2B 62.1 Wheat-Composite2004-2B 87
	[ Show Nearby Loci ]
In QTL	Yr5
Map Data	Wheat genes Wheat, Yr genes and QTL
2 Point Data	Centromere/Yr5#1 Yr7/Yr5#1 Yr7/Yr5#2
Species	Triticum aestivum
Probe	WMS501 Yr5_KASP
Linked QTL	Yr5
Associated Gene	Yr5 (Triticum)
Gene Class	Reaction to Puccinia striiformis Westend.
Reference	Sun Q et al. (2002) Microsatellite marker for yellow rust resistance gene Yr5 in wheat introgressed from spelt wheat Plant Breeding 121:539-541.
Remark	Trait marker Xgwm501-2B Nearby marker on Composite map: Xgwm501 Position on Composite map estimated by GrainGenes.
Locus Candidate for Gene	IWA7850
Type	SNP
Synonym	Other name BS00185614 wsnp_Ra_c31353_40494768 Wang S et al. (2014) Characterization of polyploid wheat genomic diversity using a high-density 90 000 single nucleotide polymorphism array. Plant Biotechnology Journal 12:787-796.
Chromosome Arm	2B
Map	[ Hide all but 1 of 11 ] Durum Wheat, NSGC Lr 2B 133.3 Wheat, 2013 9K Consensus 2B 188.85 Wheat, Yr genes and QTL 2B 66.7 Wheat_2014_90KSNP_2B 109.526 Wheat_AB, Colosseo x Lloyd 2B2 15.6 Wheat_AB, Mohawk x Cocorit69 2B_2 78.8 Wheat_AB, Simeto x Molise Colli 2B 162.3 Wheat_AB, Svevo x Ciccio 2B_1 124.3 Wheat_AB, W9292-260D3 x Kofa 2B_2 61.83 Wheat_AB_2015_Consensus-2B 133.3 Wheat_Yr_2021-2B 219.36
	[ Show Nearby Loci ]
Map Data	Durum Wheat, NSGC Lr [ Show all 11 ]
Species	Triticum aestivum
Probe	wsnp_Ra_c31353_40494768
Reference	Wang S et al. (2014) Characterization of polyploid wheat genomic diversity using a high-density 90 000 single nucleotide polymorphism array. Plant Biotechnology Journal 12:787-796. Cavanagh CR et al. (2013) Genome-wide comparative diversity uncovers multiple targets of selection for improvement in hexaploid wheat landraces and cultivars Proceedings of the National Academy of Sciences, USA 110:8057-8062.
Locus Candidate for Gene	IWA4096
Type	SNP
Synonym	Other name BS00182831 wsnp_Ex_c5123_9088111 Wang S et al. (2014) Characterization of polyploid wheat genomic diversity using a high-density 90 000 single nucleotide polymorphism array. Plant Biotechnology Journal 12:787-796.
Chromosome Arm	2B
Map	[ Hide all but 1 of 13 ] Durum Wheat, NSGC Lr 2B 141.2 Langdon_Deletion_PHS_2B 90.73 Wheat, 2013 9K Consensus 2B 199.32 Wheat, 2013 9K Consensus 2D 175.64 Wheat, Yr genes and QTL 2B 69.9 Wheat, Yr genes and QTL 2D 55.8 Wheat_2014_90KSNP_2B 113.857 Wheat_AB, Colosseo x Lloyd 2B2 19.9 Wheat_AB, Meridiano x Claudio 2B 149.5 Wheat_AB, Svevo x Ciccio 2B_1 129.8 Wheat_AB, Svevo x Zavitan 2B 125.3 Wheat_AB, W9292-260D3 x Kofa 2B_2 74.93 Wheat_AB_2015_Consensus-2B 141.2
	[ Show Nearby Loci ]
In QTL	QPhs.fcu-2B.2
Map Data	Durum Wheat, NSGC Lr [ Show all 11 ]
Species	Triticum aestivum
Probe	wsnp_Ex_c5123_9088111
Reference	Wang S et al. (2014) Characterization of polyploid wheat genomic diversity using a high-density 90 000 single nucleotide polymorphism array. Plant Biotechnology Journal 12:787-796. Cavanagh CR et al. (2013) Genome-wide comparative diversity uncovers multiple targets of selection for improvement in hexaploid wheat landraces and cultivars Proceedings of the National Academy of Sciences, USA 110:8057-8062.
Possible Orthologs	IWA4096-2B IWA4096-2D
Locus Candidate for Gene	IWA6121
Type	SNP
Map	Wheat, 2013 9K Consensus 2B 206.19 Wheat, Yr genes and QTL 2B 72 Wheat_2014_i9K_Ug99_PIxLMPG_2B 82.2 Wheat_Yr_2021-2B 236.7
	[ Show Nearby Loci ]
Map Data	Wheat, 2013 9K Consensus Wheat, Yr genes and QTL Wheat, Yr Update, 2021 Wheat_2014_i9K_Ug99_PIxLMPG
Probe	wsnp_JD_c6010_7167084
Reference	Cavanagh CR et al. (2013) Genome-wide comparative diversity uncovers multiple targets of selection for improvement in hexaploid wheat landraces and cultivars Proceedings of the National Academy of Sciences, USA 110:8057-8062.

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