Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: cdo1199a

[Submit comment/correction]

Locus	cdo1199a
Type	RFLP
Map	Oat-KxO/2003-6 24.3
	[ Show Nearby Loci ]
Map Data	Oat, KxO, 2003 Oat-2001-KxM
Probe	CDO1199
Homology	TRP1_MAIZE e-value: 3e-08 TRYPTOPHAN SYNTHASE BETA CHAIN 1 (ORANGE PERICARP 1) TRP1_MAIZE e-value: 8e-34 TRYPTOPHAN SYNTHASE BETA CHAIN 1 (ORANGE PERICARP 1)
Remark	Marker placement value = 5.67 cM on map Oat-KxO/2003-6 Marker is not a framework marker on map Oat-KxO/2003-6
Possible Orthologs	CDO1199 [ Show all 10 ]
Probe for Locus	CDO1199
Locus	[ Hide all but 1 of 12 ] Xcdo1199A RI035A8 Xcdo1199-7A CDO1199 Xcdo1199B cdo1199a cdo1199b Xcdo1199 CDO1199A CDO1199B cdo1199c Xcdo1199c
Synonym	Synonym HAR35_1402
Reference	Wight CP et al. (2004) Discovery, localization, and sequence characterization of molecular markers for the crown rust resistance genes Pc38, Pc39, and Pc48 in cultivated oat (Avena sativa L.) Molecular Breeding 14:349-361. Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
General Remarks	Uni-ZAP XR library OatUni-ZAPXR [c] OatUni-ZAPXR
Type	cDNA
Sequence	BE439152 BE439220 CDO1199_WHE03C05.s1 CDO1199_WHE03C05.r1 CN180768
Polymorphism	CDO1199 EcoRI Durums CDO1199 EcoRI
Linkage Group	7L
Insert Enzyme	EcoRI XhoI
Source Species	Avena sativa
Source Germplasm	Brooks (oat)
Source Tissue	etiolated leaf
Insert Size	1.2
PCR size	1.2