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GrainGenes Marker Report: k00016

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Locus	k00016
Type	CAPS
Chromosome	6H
Map	Hv-HNxH602-6H 142.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak11p10
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HhaI SNP = T/C SNP structure (UNICODE) = AAACGAGATGYGCTGTCTAGT Parent 1 SNP sequence = AAACGAGATGTGCTGTCTAGT Parent 2 SNP sequence = AAACGAGATGCGCTGTCTAGT Recognized sequence for CAPs locus = GCGC
Probe for Locus	baak11p10
Locus	k00016
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = thioredoxin-like 5 [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - CCTGCCAAATGCCTTTACAT Right 5' - ACCTGTTGCGGCTTCAATAC
Sequence	AV909193
PCR size	379