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GrainGenes Marker Report: k00054

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Locus	k00054
Type	CAPS
Chromosome	5H
Map	Hv-HNxH602-5H 288.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak12i02
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HapII SNP = G/A SNP structure (UNICODE) = TAAGCATTCCRGTGCAAATCC Parent 1 SNP sequence = TAAGCATTCCGGTGCAAATCC Parent 2 SNP sequence = TAAGCATTCCAGTGCAAATCC Recognized sequence for CAPs locus = CCGG
Probe for Locus	baak12i02
Locus	k00054
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = RabGAP/TBC domain-containing protein [Arabidopsis thaliana] dbj BAB08757.1 unnamed protein product [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - AGCCTGGATTGCAATGTTTT Right 5' - GGGGCGAATGGAAACTTATT
Sequence	AV911237
PCR size	396