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GrainGenes Marker Report: k00058

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Locus	k00058
Type	CAPS
Chromosome	5H
Map	Hv-HNxH602-5H 282.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak13k16
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = XhoI SNP = G/A SNP structure (UNICODE) = AGCCACTCGARAAGCAGGACT Parent 1 SNP sequence = AGCCACTCGAGAAGCAGGACT Parent 2 SNP sequence = AGCCACTCGAAAAGCAGGACT Recognized sequence for CAPs locus = CTCGAG
Probe for Locus	baak13k16
Locus	k00058
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Type	PCR
PCR primers	Left 5' - GGGAAGCAACAAAGGTCAAA Right 5' - AGGGCAACACAATCGGTATC
PCR size	379