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GrainGenes Marker Report: k00059

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Locus	k00059
Type	CAPS
Chromosome	3H
Map	Hv-HNxH602-3H 111.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak13p20
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HaeIII SNP = G/C SNP structure (UNICODE) = TATCGTCGGCSTGAATCTGAT Parent 1 SNP sequence = TATCGTCGGCGTGAATCTGAT Parent 2 SNP sequence = TATCGTCGGCCTGAATCTGAT Recognized sequence for CAPs locus = GGCC
Probe for Locus	baak13p20
Locus	k00059
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = P0007F06.23 [Oryza sativa (japonica cultivar-group)] dbj BAB84384.1 P0007F06.23 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GGGTCGCAGTTTTTCATCTT Right 5' - GCTGTACCATGAACCCACCT
Sequence	AV911687
PCR size	397