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GrainGenes Marker Report: k00073

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Locus	k00073
Type	CAPS
Chromosome	4H
Map	Hv-HNxH602-4H 137
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak11c22
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 9 ] Restriction enzyme used for CAPS analysis = TaqI SNP = C/A SNP structure (UNICODE) = CAAGATAGTCMAAGATGCCAA Parent 1 SNP sequence = CAAGATAGTCCAAGATGCCAA Parent 2 SNP sequence = CAAGATAGTCAAAGATGCCAA SNP = A/G SNP structure (UNICODE) = GCAGGAATCTRTGGTGGCCTG Parent 1 SNP sequence = GCAGGAATCTATGGTGGCCTG Parent 2 SNP sequence = GCAGGAATCTGTGGTGGCCTG
Probe for Locus	baak11c22
Locus	k00073
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = leucine-rich repeat family protein [Arabidopsis thaliana] gb AAM13067.1 unknown protein [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - CCCCGGCTATCACAATAGAA Right 5' - CCAGAAGAACCGAAGACCAG
Sequence	AV910871
PCR size	350