GrainGenes Marker Report: k00084
Locus
k00084
Type
CAPS
Chromosome
3H
Map
Hv-HNxH602-3H 243.8
[ Show Nearby Loci ]
Map Data
Barley, HN x H602, Sato2009
Species
Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe
baak14e02
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark
[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = AluI SNP = C/T SNP structure (UNICODE) = AAATAGTAAGYTCATGTCCAG Parent 1 SNP sequence = AAATAGTAAGCTCATGTCCAG Parent 2 SNP sequence = AAATAGTAAGTTCATGTCCAG Recognized sequence for CAPs locus = AGCT
Probe for Locus
baak14e02
Locus
k00084
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks
Best BLAST Hit = SET-domain transcriptional regulator family [Arabidopsis thaliana]
Type
PCR
PCR primers
Left 5' - CCTTGTTCTAGCCGCTTTTG
Right 5' - ATACACCCTGTGATCGCTCC
Sequence
BJ454652
PCR size
407
GrainGenes Marker Report: k00084
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