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GrainGenes Marker Report: k00108

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Locus	k00108
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 276.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak18g16
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 16 ] SNP = G/A SNP structure (UNICODE) = CTGATATCCGRCTCAGCTCGT Parent 1 SNP sequence = CTGATATCCGGCTCAGCTCGT Parent 2 SNP sequence = CTGATATCCGACTCAGCTCGT SNP = G/T SNP structure (UNICODE) = TGAACATCGGKGATGCCTGCT Parent 1 SNP sequence = TGAACATCGGGGATGCCTGCT Parent 2 SNP sequence = TGAACATCGGTGATGCCTGCT SNP = G/C SNP structure (UNICODE) = CGCGCCGCTASACGCGAAGCA Parent 1 SNP sequence = CGCGCCGCTAGACGCGAAGCA Parent 2 SNP sequence = CGCGCCGCTACACGCGAAGCA SNP = C/T SNP structure (UNICODE) = CCTTGGAGCAYCTTTGAAGCC Parent 1 SNP sequence = CCTTGGAGCACCTTTGAAGCC Parent 2 SNP sequence = CCTTGGAGCATCTTTGAAGCC
Probe for Locus	baak18g16
Locus	k00108
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBa0009K15.15 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - AATGACTGGAGCTGGAGGTG Right 5' - TCCTGGCACTCTCACAAAGA
Sequence	BJ455816
PCR size	386