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GrainGenes Marker Report: k00122

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Locus	k00122
Type	CAPS
Chromosome	6H
Map	Hv-HNxH602-6H 204.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak14k12
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 10 ] Restriction enzyme used for CAPS analysis = AvaII SNP = A/G SNP structure (UNICODE) = GCATCCGCTGRGGCTGGTGCA Parent 1 SNP sequence = GCATCCGCTGAGGCTGGTGCA Parent 2 SNP sequence = GCATCCGCTGGGGCTGGTGCA Recognized sequence for CAPs locus = GGWCC SNP = T/C SNP structure (UNICODE) = GCACCCTTGTYATCGTCCAAC Parent 1 SNP sequence = GCACCCTTGTTATCGTCCAAC Parent 2 SNP sequence = GCACCCTTGTCATCGTCCAAC
Probe for Locus	baak14k12
Locus	k00122
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = thylakoid-bound ascorbate peroxidase [Triticum aestivum]
Type	PCR
PCR primers	Left 5' - CAGAGCATTTTCATGGAGCA Right 5' - CTATCCGAAGTTGGAGGACG
Sequence	BJ454752
PCR size	406