GrainGenes Marker Report: k00161
Locus
k00161
Type
CAPS
Chromosome
2H
Map
Hv-HNxH602-2H 210.5
[ Show Nearby Loci ]
Map Data
Barley, HN x H602, Sato2009
Species
Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe
baak15p17
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark
[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HapII SNP = G/A SNP structure (UNICODE) = GACTTTGGCCRGGGGATCGCT Parent 1 SNP sequence = GACTTTGGCCGGGGGATCGCT Parent 2 SNP sequence = GACTTTGGCCAGGGGATCGCT Recognized sequence for CAPs locus = CCGG
Probe for Locus
baak15p17
Locus
k00161
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks
Best BLAST Hit = OSJNBa0035M09.8 [Oryza sativa (japonica cultivar-group)]
Type
PCR
PCR primers
Left 5' - GTCTCAATATGCGTGGCCTT
Right 5' - CCCAAATGGCCATAGAGAAA
Sequence
BJ455087
PCR size
440
GrainGenes Marker Report: k00161
|
| ||||||||
|
| ||||||||
|
| ||||||||
|
| ||||||||
| |||||||||
|
| ||||||||
|
| ||||||||
|
| ||||||||
|
| ||||||||
|
| ||||||||
|
| ||||||||
|
| ||||||||
|
| ||||||||
|
| ||||||||
|
| ||||||||
|
| ||||||||
|
| ||||||||
|
|