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GrainGenes Marker Report: k00168

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Locus	k00168
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 133.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak18p11
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 16 ] SNP = T/G SNP structure (UNICODE) = AGCTGGCGTTKGATCTGTTGA Parent 1 SNP sequence = AGCTGGCGTTTGATCTGTTGA Parent 2 SNP sequence = AGCTGGCGTTGGATCTGTTGA SNP = G/A SNP structure (UNICODE) = ACAACAGAGARATTATCACAA Parent 1 SNP sequence = ACAACAGAGAGATTATCACAA Parent 2 SNP sequence = ACAACAGAGAAATTATCACAA SNP = C/T SNP structure (UNICODE) = AAAAGTTCTTYCTTTTAATCC Parent 1 SNP sequence = AAAAGTTCTTCCTTTTAATCC Parent 2 SNP sequence = AAAAGTTCTTTCTTTTAATCC SNP = A/G SNP structure (UNICODE) = TGGATCTGCTRGTGCTGGCGC Parent 1 SNP sequence = TGGATCTGCTAGTGCTGGCGC Parent 2 SNP sequence = TGGATCTGCTGGTGCTGGCGC
Probe for Locus	baak18p11
Locus	k00168
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative peptidyl-prolycis-trans isomerase protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CGGATGATGTACCCTTGCAT Right 5' - GCTTCTTCACCGACGAGTTC
Sequence	BQ472569
PCR size	365