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GrainGenes Marker Report: k00169

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Locus	k00169
Type	CAPS
Chromosome	3H
Map	Hv-HNxH602-3H 289.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak14i02
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = AluI SNP = T/C SNP structure (UNICODE) = ATTACTCAGCYACACACCTAT Parent 1 SNP sequence = ATTACTCAGCTACACACCTAT Parent 2 SNP sequence = ATTACTCAGCCACACACCTAT Recognized sequence for CAPs locus = AGCT
Probe for Locus	baak14i02
Locus	k00169
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Type	PCR
PCR primers	Left 5' - ACCCGACCTGTGTAAGCTGT Right 5' - TCTGCTGAGGACAGGGAACT
Sequence	BJ454717
PCR size	481